Pakket: r-cran-alakazam (1.1.0-1 en anderen)

[ Bron: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Andere aan r-cran-alakazam gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [niet amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-base-core (>= 4.0.4-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-cran-airr

  GNU R AIRR data representation reference library

• dep: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-dplyr (>= 1.0)

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2 (>= 3.2.0)

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• dep: r-cran-igraph (>= 1.0.0)

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• dep: r-cran-lazyeval

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• dep: r-cran-matrix

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• dep: r-cran-progress

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• dep: r-cran-rcpp (>= 0.12.12)

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• dep: r-cran-readr

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• dep: r-cran-rlang

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• dep: r-cran-scales

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• dep: r-cran-seqinr

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• dep: r-cran-stringi

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• dep: r-cran-tibble

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• dep: r-cran-tidyr (>= 1.0.0)

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

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r-cran-alakazam downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.1.0-1+b1	2.484,2 kB	2.940,0 kB	[overzicht]
arm64	1.1.0-1	2.479,4 kB	2.931,0 kB	[overzicht]
armel	1.1.0-1	2.480,7 kB	2.926,0 kB	[overzicht]
armhf	1.1.0-1	2.480,1 kB	2.902,0 kB	[overzicht]
i386	1.1.0-1	2.486,4 kB	2.942,0 kB	[overzicht]
mips64el	1.1.0-1	2.479,4 kB	2.953,0 kB	[overzicht]
mipsel	1.1.0-1	2.478,6 kB	2.946,0 kB	[overzicht]
ppc64el	1.1.0-1	2.484,4 kB	2.959,0 kB	[overzicht]
s390x	1.1.0-1	2.479,6 kB	2.939,0 kB	[overzicht]