Pakket: cufflinks (2.2.1+dfsg.1-8 en anderen) [non-free]

[ Bron: cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Andere aan cufflinks gerelateerde pakketten

• dep: libboost-serialization1.74.0 (>= 1.74.0)

  serialization library for C++

• dep: libboost-thread1.74.0 (>= 1.74.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 4.0) [amd64, armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.1) [s390x]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

  Pakket niet beschikbaar

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Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.2.1+dfsg.1-8+b1	1.500,5 kB	10.384,0 kB	[overzicht]
arm64	2.2.1+dfsg.1-8+b1	1.390,1 kB	9.869,0 kB	[overzicht]
armel	2.2.1+dfsg.1-8+b1	1.211,9 kB	9.133,0 kB	[overzicht]
armhf	2.2.1+dfsg.1-8+b1	1.114,3 kB	6.213,0 kB	[overzicht]
i386	2.2.1+dfsg.1-8+b1	1.522,5 kB	10.603,0 kB	[overzicht]
mips64el	2.2.1+dfsg.1-8+b1	1.561,7 kB	15.202,0 kB	[overzicht]
mipsel	2.2.1+dfsg.1-8+b1	1.500,6 kB	13.369,0 kB	[overzicht]
ppc64el	2.2.1+dfsg.1-8+b1	1.549,2 kB	13.797,0 kB	[overzicht]
s390x	2.2.1+dfsg.1-8+b1	1.314,2 kB	10.901,0 kB	[overzicht]