Pakket: cufflinks (2.2.1+dfsg.1-10) [non-free]

[ Bron: cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Andere aan cufflinks gerelateerde pakketten

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  serialization library for C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 4.0) [amd64, armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.1) [s390x]

  dep: libgcc-s1 (>= 4.2) [ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.552,7 kB	10.980,0 kB	[overzicht]
arm64	1.437,2 kB	10.662,0 kB	[overzicht]
armel	1.295,1 kB	9.713,0 kB	[overzicht]
armhf	1.167,7 kB	6.533,0 kB	[overzicht]
i386	1.576,6 kB	10.987,0 kB	[overzicht]
mips64el	1.605,5 kB	15.646,0 kB	[overzicht]
ppc64el	1.553,3 kB	13.734,0 kB	[overzicht]
riscv64	1.551,7 kB	8.570,0 kB	[overzicht]
s390x	1.494,6 kB	11.938,0 kB	[overzicht]