Paketti: centrifuge (1.0.3-8)

[ Source: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Muut pakettiin centrifuge liittyvät paketit

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 9)

  GNU standardi C++ -kirjasto, versio 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

Imuroi centrifuge

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	525.0 kt	1,669.0 kt	[tiedostoluettelo]
arm64	492.5 kt	1,463.0 kt	[tiedostoluettelo]
armel	489.3 kt	1,491.0 kt	[tiedostoluettelo]
armhf	483.2 kt	1,171.0 kt	[tiedostoluettelo]
i386	545.5 kt	1,799.0 kt	[tiedostoluettelo]
mips64el	523.3 kt	1,805.0 kt	[tiedostoluettelo]
ppc64el	551.4 kt	1,787.0 kt	[tiedostoluettelo]