Paket: centrifuge (1.0.3-8)

[ Quellcode: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere Pakete mit Bezug zu centrifuge

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  Zählt k-mere in DNA-Sequenzen

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, i386]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 9)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  Interaktive objektorientierte Hochsprache (Python3-Standardversion)

centrifuge herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	525,0 kB	1.669,0 kB	[Liste der Dateien]
arm64	492,5 kB	1.463,0 kB	[Liste der Dateien]
armel	489,3 kB	1.491,0 kB	[Liste der Dateien]
armhf	483,2 kB	1.171,0 kB	[Liste der Dateien]
i386	545,5 kB	1.799,0 kB	[Liste der Dateien]
mips64el	523,3 kB	1.805,0 kB	[Liste der Dateien]
ppc64el	551,4 kB	1.787,0 kB	[Liste der Dateien]