Pakket: libseqlib2 (1.2.0+dfsg-9)

[ Bron: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tags: Role: Shared Library

Andere aan libseqlib2 gerelateerde pakketten

• dep: libc6 (>= 2.33)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

libseqlib2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	158,0 kB	553,0 kB	[overzicht]
arm64	137,6 kB	468,0 kB	[overzicht]
armel	127,8 kB	467,0 kB	[overzicht]
armhf	132,5 kB	339,0 kB	[overzicht]
i386	165,4 kB	499,0 kB	[overzicht]
mips64el	138,7 kB	557,0 kB	[overzicht]
mipsel	139,6 kB	551,0 kB	[overzicht]
ppc64el	162,4 kB	597,0 kB	[overzicht]
s390x	135,7 kB	496,0 kB	[overzicht]