Pakket: libssw0 (1.1-13)

[ Bron: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Tags: Role: Shared Library

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• dep: libc6 (>= 2.14) [amd64]

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  dep: libc6 (>= 2.17) [arm64, ppc64el]

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• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	19,2 kB	55,0 kB	[overzicht]
arm64	18,1 kB	51,0 kB	[overzicht]
armel	20,5 kB	59,0 kB	[overzicht]
armhf	20,7 kB	51,0 kB	[overzicht]
i386	26,5 kB	83,0 kB	[overzicht]
mips64el	26,1 kB	77,0 kB	[overzicht]
mipsel	25,7 kB	72,0 kB	[overzicht]
ppc64el	19,4 kB	83,0 kB	[overzicht]
s390x	23,2 kB	71,0 kB	[overzicht]