Pakket: libseqlib2 (1.2.0+dfsg-11 en anderen)

[ Bron: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tags: Role: Shared Library

Andere aan libseqlib2 gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp26 (>= 1.9.6)

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

libseqlib2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.2.0+dfsg-11+b2	167,9 kB	565,0 kB	[overzicht]
arm64	1.2.0+dfsg-11+b2	142,7 kB	533,0 kB	[overzicht]
armel	1.2.0+dfsg-11+b2	135,3 kB	435,0 kB	[overzicht]
armhf	1.2.0+dfsg-11+b2	138,4 kB	335,0 kB	[overzicht]
i386	1.2.0+dfsg-11+b2	177,2 kB	511,0 kB	[overzicht]
mips64el	1.2.0+dfsg-11+b2	141,1 kB	556,0 kB	[overzicht]
ppc64el	1.2.0+dfsg-11+b2	167,0 kB	597,0 kB	[overzicht]
riscv64	1.2.0+dfsg-11+b2	156,6 kB	396,0 kB	[overzicht]
s390x	1.2.0+dfsg-11+b2	157,8 kB	512,0 kB	[overzicht]