Paketti: libseqlib2 (1.2.0+dfsg-9)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tagit: Role: Shared Library

Muut pakettiin libseqlib2 liittyvät paketit

• dep: libc6 (>= 2.33)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf, mipsel]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11)

  GNU standardi C++ -kirjasto, versio 3

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

Imuroi libseqlib2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	158.0 kt	553.0 kt	[tiedostoluettelo]
arm64	137.6 kt	468.0 kt	[tiedostoluettelo]
armel	127.8 kt	467.0 kt	[tiedostoluettelo]
armhf	132.5 kt	339.0 kt	[tiedostoluettelo]
i386	165.4 kt	499.0 kt	[tiedostoluettelo]
mips64el	138.7 kt	557.0 kt	[tiedostoluettelo]
mipsel	139.6 kt	551.0 kt	[tiedostoluettelo]
ppc64el	162.4 kt	597.0 kt	[tiedostoluettelo]
s390x	135.7 kt	496.0 kt	[tiedostoluettelo]