套件：libseqlib2（1.2.0+dfsg-9）

[ 原始碼： libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

標籤: 角色: 共用函式庫

其他與 libseqlib2 有關的套件

• dep: libc6 (>= 2.33)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, mipsel]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

下載 libseqlib2

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	158。0 kB	553。0 kB	[檔案列表]
arm64	137。6 kB	468。0 kB	[檔案列表]
armel	127。8 kB	467。0 kB	[檔案列表]
armhf	132。5 kB	339。0 kB	[檔案列表]
i386	165。4 kB	499。0 kB	[檔案列表]
mips64el	138。7 kB	557。0 kB	[檔案列表]
mipsel	139。6 kB	551。0 kB	[檔案列表]
ppc64el	162。4 kB	597。0 kB	[檔案列表]
s390x	135。7 kB	496。0 kB	[檔案列表]