Package: khmer (2.1.2+dfsg-6)

[ Source: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Other Packages Related to khmer

• dep: cython3 (>= 0.26.1)

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

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• dep: libc6 (>= 2.14) [amd64]

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  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0) [arm64]

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  dep: libgcc1 (>= 1:3.4) [amd64]

• dep: libgomp1 (>= 4.9)

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• dep: libstdc++6 (>= 5.2)

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• dep: python3

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  dep: python3 (<< 3.8)

  dep: python3 (>= 3.7~)

• dep: python3-bz2file

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• dep: python3-screed (>= 1.0)

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• dep: zlib1g (>= 1:1.2.3.4)

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Architecture	Package Size	Installed Size	Files
amd64	6,488.5 kB	29,563.0 kB	[list of files]
arm64	6,408.0 kB	29,286.0 kB	[list of files]