Paket: khmer (2.1.2+dfsg-6)

[ Källkod: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Märken: Biologi: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Andra paket besläktade med khmer

• dep: cython3 (>= 0.26.1)

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0) [arm64]

  GCC stödbibliotek

  dep: libgcc1 (>= 1:3.4) [amd64]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.8)

  dep: python3 (>= 3.7~)

• dep: python3-bz2file

  Python3 library for reading and writing bzip2-compressed files

• dep: python3-screed (>= 1.0)

  short nucleotide read sequence utils in Python 3

• dep: zlib1g (>= 1:1.2.3.4)

  Kompressionsbibliotek - körtidspaket

Hämta khmer

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	6.488,5 kbyte	29.563,0 kbyte	[filförteckning]
arm64	6.408,0 kbyte	29.286,0 kbyte	[filförteckning]