Package: khmer (3.0.0~a3+dfsg-4 and others)

[ Source: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Other Packages Related to khmer

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  고성능 블럭 소팅 파일 압축 라이브러리 - 런타임

• dep: libc6 (>= 2.32)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC 기능 지원 라이브러리

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) 지원 라이브러리

• dep: libstdc++6 (>= 11)

  GNU 표준 C++ 라이브러리 v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-screed

  short nucleotide read sequence utils in Python 3

• dep: zlib1g (>= 1:1.2.3.4)

  압축 라이브러리 - 런타임

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Architecture	Version	Package Size	Installed Size	Files
amd64	3.0.0~a3+dfsg-4+b2	6,913.1 kB	37,398.0 kB	[list of files]