Package: mash (2.3+dfsg-6 and others)

[ Source: mash  ]

veloce stima di distanze in genoma e metagenoma usando MinHash

Mash usa gli hash MinHash sensibili localmente per ridurre grandi biosequenze in sketch rappresentativi e stimare rapidamente le distanze di coppia tra genomi o metagenomi. I database di sketch di Mash delineano in maniera efficace i confini conosciuti tra le specie, permettono la costruzione di filogenie approssimate e possono essere cercati in secondi usando genomi assemblati o risultati grezzi di sequenziamento da Illumina, Pacific Biosciences e Oxford Nanopore. Per la metagenomica, Mash scala fino a migliaia di campioni e può replicare i risultati dello Human Microbiome Project e del Global Ocean Survey in una frazione del tempo.

Other Packages Related to mash

• dep: libc6 (>= 2.29) [hppa, m68k, sparc64, x32]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.30) [sh4]

  dep: libc6 (>= 2.34) [not alpha, hppa, m68k, sh4, sparc64, x32]

• dep: libc6.1 (>= 2.34) [alpha]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6.1-udeb

• dep: libcapnp-0.7.0 [hppa, m68k, sh4, sparc64, x32]

  libreria C++ Cap'n Proto

• dep: libcapnp-1.0.1 [not hppa, m68k, sh4, sparc64, x32]

  libreria C++ Cap'n Proto

• dep: libgcc-s1 (>= 3.0) [not alpha, hppa, m68k, riscv64, sh4, sparc64]

  libreria di supporto a GCC

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [sh4]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  libreria di supporto a GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  libreria di supporto a GCC

• dep: libgsl25 (>= 2.6) [hppa, m68k, sh4, sparc64, x32]

  Package not available

• dep: libgsl28 (>= 2.8+dfsg) [not hppa, m68k, sh4, sparc64, x32]

  GNU Scientific Library (GSL) -- pacchetto della libreria

• dep: libgslcblas0 (>= 2.6) [hppa, m68k, sh4, sparc64]

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• dep: libmurmurhash2 (>= 0.2)

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• dep: libstdc++6 (>= 13.1) [not hppa, m68k, sh4, sparc64, x32]

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  dep: libstdc++6 (>= 5.2) [hppa, m68k, sh4, sparc64, x32]

• dep: zlib1g (>= 1:1.1.4)

  libreria di compressione - runtime

Download mash

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.3+dfsg-6+b1	176.8 kB	620.0 kB	[list of files]
amd64	2.3+dfsg-6+b1	187.7 kB	538.0 kB	[list of files]
arm64	2.3+dfsg-6+b1	165.4 kB	490.0 kB	[list of files]
hppa (unofficial port)	2.2.2+dfsg-1+b1	148.4 kB	418.0 kB	[list of files]
m68k (unofficial port)	2.2.2+dfsg-1+b1	141.0 kB	423.0 kB	[list of files]
mips64el	2.3+dfsg-6+b1	165.9 kB	635.0 kB	[list of files]
ppc64 (unofficial port)	2.3+dfsg-6+b1	184.8 kB	618.0 kB	[list of files]
ppc64el	2.3+dfsg-6+b1	184.5 kB	618.0 kB	[list of files]
riscv64	2.3+dfsg-6+b2	185.6 kB	402.0 kB	[list of files]
s390x	2.3+dfsg-6+b1	187.4 kB	546.0 kB	[list of files]
sh4 (unofficial port)	2.2.2+dfsg-1+b1	180.6 kB	400.0 kB	[list of files]
sparc64 (unofficial port)	2.2.2+dfsg-1+b1	123.1 kB	421.0 kB	[list of files]
x32 (unofficial port)	2.2.2+dfsg-1+b1	147.1 kB	407.0 kB	[list of files]