Package: nanopolish (0.14.0-1)

[ Source: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Other Packages Related to nanopolish

• dep: libc6 (>= 2.29)

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• dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, i386, mips64el]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

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• dep: libhdf5-103-1

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• dep: libhts3 (>= 1.10)

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• dep: libslow5-0 (>= 0.5.1+dfsg)

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• dep: libstdc++6 (>= 11)

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• dep: libstreamvbyte0 (>= 0.4.1)

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• dep: perl

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• dep: python3

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• dep: zlib1g (>= 1:1.1.4)

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• rec: python3-biopython

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	2,150.9 kB	9,355.0 kB	[list of files]
arm64	2,084.4 kB	9,218.0 kB	[list of files]
armel	2,082.3 kB	9,345.0 kB	[list of files]
armhf	2,096.9 kB	8,961.0 kB	[list of files]
i386	2,167.9 kB	9,441.0 kB	[list of files]
mips64el	2,110.5 kB	9,655.0 kB	[list of files]
mipsel	2,128.5 kB	9,647.0 kB	[list of files]
ppc64el	2,159.1 kB	9,667.0 kB	[list of files]