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Package: libhts3 (1.16+ds-3)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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Architecture Package Size Installed Size Files
amd64 419.5 kB1,044.0 kB [list of files]
arm64 382.7 kB1,188.0 kB [list of files]
armel 363.8 kB1,123.0 kB [list of files]
armhf 366.2 kB931.0 kB [list of files]
i386 458.0 kB1,151.0 kB [list of files]
mips64el 377.8 kB1,301.0 kB [list of files]
mipsel 393.9 kB1,293.0 kB [list of files]
ppc64el 453.9 kB1,511.0 kB [list of files]
s390x 381.5 kB1,076.0 kB [list of files]