Paketti: libseqlib2 (1.2.0+dfsg-11 ja muut)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tagit: Role: Shared Library

Muut pakettiin libseqlib2 liittyvät paketit

• dep: libc6 (>= 2.33) [ei armel, armhf]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.34) [armel, armhf]

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 13.1)

  GNU standardi C++ -kirjasto, versio 3

• dep: zlib1g (>= 1:1.1.4) [ei armel, armhf]

  pakkauskirjaston ajonaikaistiedostot

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

Imuroi libseqlib2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.2.0+dfsg-11+b1	167.7 kt	569.0 kt	[tiedostoluettelo]
arm64	1.2.0+dfsg-11+b1	140.9 kt	468.0 kt	[tiedostoluettelo]
armel	1.2.0+dfsg-11+b1	132.9 kt	431.0 kt	[tiedostoluettelo]
armhf	1.2.0+dfsg-11+b1	135.8 kt	335.0 kt	[tiedostoluettelo]
i386	1.2.0+dfsg-11+b1	174.9 kt	511.0 kt	[tiedostoluettelo]
mips64el	1.2.0+dfsg-11+b1	140.6 kt	558.0 kt	[tiedostoluettelo]
ppc64el	1.2.0+dfsg-11+b1	165.1 kt	597.0 kt	[tiedostoluettelo]
s390x	1.2.0+dfsg-11+b1	154.8 kt	512.0 kt	[tiedostoluettelo]