Package: phybin (0.3-5)

[ Source: phybin  ]

binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Other Packages Related to phybin

• dep: libc6 (>= 2.29)

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  also a virtual package provided by libc6-udeb

• dep: libffi7 (>= 3.3~20180313)

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• dep: libgmp10

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,537.4 kB	11,602.0 kB	[list of files]
arm64	1,926.3 kB	14,579.0 kB	[list of files]
armel	1,799.7 kB	12,190.0 kB	[list of files]
armhf	1,807.4 kB	12,158.0 kB	[list of files]
i386	1,586.5 kB	9,347.0 kB	[list of files]
mips64el	5,155.1 kB	56,961.0 kB	[list of files]
mipsel	3,415.4 kB	38,965.0 kB	[list of files]
ppc64el	3,395.8 kB	37,296.0 kB	[list of files]
s390x	7,441.9 kB	52,929.0 kB	[list of files]