Package: tiddit (3.6.1+dfsg-2)

[ Source: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Other Packages Related to tiddit

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [not arm64, ppc64el, riscv64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.14)

  dep: python3 (>= 3.12~)

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy2-abi0

  Package not available

  or python3-numpy-abi9

  virtual package provided by python3-numpy

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

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Architecture	Package Size	Installed Size	Files
amd64	483.4 kB	2,559.0 kB	[list of files]
arm64	345.9 kB	2,407.0 kB	[list of files]
armel	375.0 kB	2,519.0 kB	[list of files]
armhf	392.1 kB	1,751.0 kB	[list of files]
i386	417.1 kB	2,543.0 kB	[list of files]
mips64el	326.5 kB	2,710.0 kB	[list of files]
ppc64el	366.7 kB	2,983.0 kB	[list of files]
riscv64	403.9 kB	1,743.0 kB	[list of files]