Package: voronota (1.22.3149-2 and others)

[ Source: voronota  ]

Voronoi diagram-based tool to find atom contacts

The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA.

Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts.

Other Packages Related to voronota

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.35) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [not arm64, armel, armhf, hppa, ia64, m68k, ppc64el, s390x]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 11) [not arm64, riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [arm64, riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download voronota

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.22.3149-2	1,971.4 kB	12,093.0 kB	[list of files]
amd64	1.22.3149-2	2,008.7 kB	11,396.0 kB	[list of files]
arm64	1.22.3149-2+b1	1,938.0 kB	11,321.0 kB	[list of files]
armel	1.22.3149-2	1,821.0 kB	10,873.0 kB	[list of files]
armhf	1.22.3149-2	1,845.7 kB	9,977.0 kB	[list of files]
hppa (unofficial port)	1.22.3149-2	1,946.6 kB	11,094.0 kB	[list of files]
i386	1.22.3149-2	2,104.1 kB	11,667.0 kB	[list of files]
ia64 (unofficial port)	1.22.3149-2	2,211.0 kB	15,074.0 kB	[list of files]
m68k (unofficial port)	1.22.3149-2	1,800.6 kB	11,207.0 kB	[list of files]
mips64el	1.22.3149-2	1,881.7 kB	12,471.0 kB	[list of files]
ppc64 (unofficial port)	1.22.3149-2	2,001.4 kB	12,282.0 kB	[list of files]
ppc64el	1.22.3149-2	2,016.5 kB	11,896.0 kB	[list of files]
riscv64	1.22.3149-2+b1	1,986.0 kB	10,509.0 kB	[list of files]
s390x	1.22.3149-2	1,875.4 kB	11,436.0 kB	[list of files]
sh4 (unofficial port)	1.22.3149-2	2,024.1 kB	10,807.0 kB	[list of files]
sparc64 (unofficial port)	1.22.3149-2	1,790.5 kB	12,033.0 kB	[list of files]
x32 (unofficial port)	1.22.3149-2	1,981.4 kB	11,063.0 kB	[list of files]