Paket: centrifuge (1.0.3-11)

[ Quellcode: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere Pakete mit Bezug zu centrifuge

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  Zählt k-mere in DNA-Sequenzen

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, i386]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

centrifuge herunterladen

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amd64	541,3 kB	1.663,0 kB	[Liste der Dateien]
arm64	501,1 kB	1.597,0 kB	[Liste der Dateien]
armel	496,7 kB	1.653,0 kB	[Liste der Dateien]
armhf	486,7 kB	1.269,0 kB	[Liste der Dateien]
i386	552,2 kB	1.813,0 kB	[Liste der Dateien]
mips64el	525,8 kB	1.894,0 kB	[Liste der Dateien]
ppc64el	564,0 kB	1.853,0 kB	[Liste der Dateien]