[ 原始碼： pairtools ]
套件：python3-pairtools（1.1.3-1 以及其他的）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他與 python3-pairtools 有關的套件
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- dep: cython3 [hppa, ia64, ppc64, sparc64, x32]
- C-Extensions for Python 3
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3.4) [hppa]
- dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, sparc64]
- dep: libc6 (>= 2.40) [sh4]
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- dep: libc6.1 (>= 2.33) [ia64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
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- dep: libgcc-s1 (>= 3.0) [alpha, amd64, arm64, i386, mips64el, ppc64el, riscv64, sh4]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libstdc++6 (>= 11) [除 hppa, ia64, ppc64, sparc64, x32]
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11) [ia64, x32]
- dep: python3 (<< 3.12) [hppa, ppc64, sparc64]
- dep: python3 (<< 3.14) [除 hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.12~) [除 hppa, ia64, ppc64, sparc64, x32]
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- dep: python3-bioframe [除 hppa, ia64, ppc64, sparc64, x32]
- library to enable flexible, scalable operations on genomic interval dataframes
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- dep: python3-click
- Command-Line Interface Creation Kit - Python 3.x
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- dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]
- test discovery and running for Python3 unittest
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- dep: python3-numpy [alpha, amd64, arm64, mips64el, ppc64el, riscv64]
- Python library for numerical computations (Python 3)
- dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3-numpy (>= 1:1.25.0) [armel, armhf, i386, m68k, sh4]
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- dep: python3-numpy-abi9 [除 alpha, amd64, arm64, mips64el, ppc64el, riscv64]
- 本虛擬套件由這些套件填實： python3-numpy
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- dep: python3-numpy2-abi0 [alpha, amd64, arm64, mips64el, ppc64el, riscv64]
- 本虛擬套件由這些套件填實： python3-numpy
- 或者 python3-numpy-abi9
- 本虛擬套件由這些套件填實： python3-numpy
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- dep: python3-pandas [除 hppa, ia64, ppc64, sparc64, x32]
- data structures for "relational" or "labeled" data
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- dep: python3-pysam (>= 0.20.0+ds-3~) [除 hppa, ia64, ppc64, sparc64, x32]
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy [除 hppa, ia64, ppc64, sparc64, x32]
- scientific tools for Python 3
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- dep: python3-standard-pipes [除 hppa, ia64, ppc64, sparc64, x32]
- pipes Standard Python Lib (Python 3)
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- dep: python3-yaml [除 hppa, ia64, ppc64, sparc64, x32]
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
下載 python3-pairtools
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| alpha （非官方移植版） | 1.1.3-1 | 235。7 kB | 1，462。0 kB | [檔案列表] |
| amd64 | 1.1.3-1 | 256。6 kB | 1，276。0 kB | [檔案列表] |
| arm64 | 1.1.3-1 | 227。5 kB | 1，456。0 kB | [檔案列表] |
| armel | 1.1.2-1 | 233。3 kB | 1，312。0 kB | [檔案列表] |
| armhf | 1.1.2-1 | 233。1 kB | 1，056。0 kB | [檔案列表] |
| hppa （非官方移植版） | 0.3.0-3.2+b2 | 144。6 kB | 640。0 kB | [檔案列表] |
| i386 | 1.1.2-1 | 247。0 kB | 1，262。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 0.3.0-3.2+b1 | 137。3 kB | 612。0 kB | [檔案列表] |
| m68k （非官方移植版） | 1.1.2-1 | 216。9 kB | 1，096。0 kB | [檔案列表] |
| mips64el | 1.1.3-1 | 219。7 kB | 1，482。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 0.3.0-3.2+b2 | 146。6 kB | 752。0 kB | [檔案列表] |
| ppc64el | 1.1.3-1 | 240。1 kB | 1，584。0 kB | [檔案列表] |
| riscv64 | 1.1.3-1 | 249。8 kB | 1，056。0 kB | [檔案列表] |
| sh4 （非官方移植版） | 1.1.2-1 | 279。6 kB | 1，312。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 0.3.0-3.2+b2 | 125。9 kB | 2，292。0 kB | [檔案列表] |
| x32 （非官方移植版） | 0.3.0-3.2+b1 | 121。6 kB | 405。0 kB | [檔案列表] |