套件：python3-pairtools（1.0.2-2 以及其他的）

[ 原始碼： pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

其他與 python3-pairtools 有關的套件

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [除 amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-bioframe

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python 3 language

• dep: python3-numpy-abi9

  本虛擬套件由這些套件填實： python3-numpy

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

下載 python3-pairtools

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1.0.2-2+b1	161。5 kB	685。0 kB	[檔案列表]
arm64	1.0.2-2+b1	147。9 kB	702。0 kB	[檔案列表]
armel	1.0.2-2+b1	144。8 kB	622。0 kB	[檔案列表]
armhf	1.0.2-2+b1	144。9 kB	554。0 kB	[檔案列表]
i386	1.0.2-2+b1	160。8 kB	674。0 kB	[檔案列表]
mips64el	1.0.2-2+b1	146。4 kB	776。0 kB	[檔案列表]
mipsel	1.0.2-2+b1	144。8 kB	702。0 kB	[檔案列表]
ppc64el	1.0.2-2+b1	158。4 kB	766。0 kB	[檔案列表]