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[ 原始碼： vcfanno  ]

套件：vcfanno（0.3.5+ds-1 以及其他的）

vcfanno 的相關連結

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Debian 的資源：

下載原始碼套件 vcfanno：

維護小組：

外部的資源：

相似套件：

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF. 

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

其他與 vcfanno 有關的套件

  • 依賴
  • 推薦
  • 建議
  • 增強

下載 vcfanno

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
amd64 0.3.5+ds-1+b3 2，195。4 kB6，551。0 kB [檔案列表]
arm64 0.3.5+ds-1+b3 1，875。2 kB6，239。0 kB [檔案列表]
armel 0.3.5+ds-1+b3 1，879。8 kB6，297。0 kB [檔案列表]
armhf 0.3.5+ds-1+b3 1，870。9 kB6，257。0 kB [檔案列表]
i386 0.3.5+ds-1+b3 2，046。4 kB6，327。0 kB [檔案列表]
mips64el 0.3.5+ds-1+b3 1，695。5 kB7，154。0 kB [檔案列表]
mipsel 0.3.5+ds-1+b3 1，730。1 kB7，041。0 kB [檔案列表]
ppc64el 0.3.5+ds-1+b3 1，834。2 kB6，238。0 kB [檔案列表]
s390x 0.3.5+ds-1+b3 2，007。4 kB6，819。0 kB [檔案列表]