Paket: vcfanno (0.3.5+ds-1 och andra)

[ Källkod: vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Andra paket besläktade med vcfanno

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

Hämta vcfanno

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.3.5+ds-1+b3	2.195,4 kbyte	6.551,0 kbyte	[filförteckning]
arm64	0.3.5+ds-1+b3	1.875,2 kbyte	6.239,0 kbyte	[filförteckning]
armel	0.3.5+ds-1+b3	1.879,8 kbyte	6.297,0 kbyte	[filförteckning]
armhf	0.3.5+ds-1+b3	1.870,9 kbyte	6.257,0 kbyte	[filförteckning]
i386	0.3.5+ds-1+b3	2.046,4 kbyte	6.327,0 kbyte	[filförteckning]
mips64el	0.3.5+ds-1+b3	1.695,5 kbyte	7.154,0 kbyte	[filförteckning]
mipsel	0.3.5+ds-1+b3	1.730,1 kbyte	7.041,0 kbyte	[filförteckning]
ppc64el	0.3.5+ds-1+b3	1.834,2 kbyte	6.238,0 kbyte	[filförteckning]
s390x	0.3.5+ds-1+b3	2.007,4 kbyte	6.819,0 kbyte	[filförteckning]