软件包：bowtie（1.3.1-3 以及其他的）

[ 源代码： bowtie  ]

Ultrafast memory-efficient short read aligner

This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.

Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c++, interface::commandline, 角色: 程序, 科学: science::calculation, scope::utility, Purpose: Analysing, use::comparing, works-with::biological-sequence

其他与 bowtie 有关的软件包

• dep: libc6 (>= 2.34) [除 arm64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [除 riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libstdc++6 (>= 13.1) [除 arm64]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 14) [arm64]

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• dep: zlib1g (>= 1:1.2.6)

  压缩库 - 运行时

• sug: bowtie-examples

  Examples for bowtie, the ultrafast memory-efficient short read aligner

下载 bowtie

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.3.1-3	1,588.9 kB	6,845.0 kB	[文件列表]
arm64	1.3.1-3+b1	1,305.9 kB	6,738.0 kB	[文件列表]
mips64el	1.3.1-3	1,050.6 kB	8,129.0 kB	[文件列表]
ppc64el	1.3.1-3	1,370.8 kB	7,889.0 kB	[文件列表]
riscv64	1.3.1-3	1,510.0 kB	5,365.0 kB	[文件列表]
s390x	1.3.1-3	1,530.6 kB	6,969.0 kB	[文件列表]