软件包：dotter（4.44.1+dfsg-7.1 以及其他的）

[ 源代码： seqtools  ]

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

标签: 界面工具箱: GTK

其他与 dotter 有关的软件包

• dep: libc6 (>= 2.38) [除 alpha, ia64, loong64, sh4]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D 矢量图形库

• dep: libcurl4 (>= 7.16.2) [ia64]

  简单易用的客户端 URL 传输软件库（OpenSSL 变种）

• dep: libcurl4t64 (>= 7.16.2) [除 ia64]

  简单易用的客户端 URL 传输软件库（OpenSSL 变种）

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, hppa, ia64, m68k, sh4]

  GCC 支持库

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支持库

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libglib2.0-0t64 (>= 2.75.3) [ia64]

  C 例程的 GLib 软件库

  dep: libglib2.0-0t64 (>= 2.76.0) [除 ia64]

• dep: libgtk2.0-0t64 (>= 2.12.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  国际化文本的布局与渲染

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  国际化文本的布局与渲染

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

下载 dotter

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	4.44.1+dfsg-7.1+b2	591.7 kB	841.0 kB	[文件列表]
amd64	4.44.1+dfsg-7.1+b3	597.2 kB	809.0 kB	[文件列表]
arm64	4.44.1+dfsg-7.1+b3	584.7 kB	837.0 kB	[文件列表]
armel	4.44.1+dfsg-7.1+b3	576.7 kB	771.0 kB	[文件列表]
armhf	4.44.1+dfsg-7.1+b3	577.9 kB	707.0 kB	[文件列表]
hppa （非官方移植版）	4.44.1+dfsg-7.1+b2	593.2 kB	792.0 kB	[文件列表]
i386	4.44.1+dfsg-7.1+b3	604.3 kB	835.0 kB	[文件列表]
ia64 （非官方移植版）	4.44.1+dfsg-7.1	621.8 kB	1,052.0 kB	[文件列表]
loong64 （非官方移植版）	4.44.1+dfsg-7.1+b2	591.8 kB	837.0 kB	[文件列表]
m68k （非官方移植版）	4.44.1+dfsg-7.1+b2	592.0 kB	811.0 kB	[文件列表]
mips64el	4.44.1+dfsg-7.1+b3	600.6 kB	924.0 kB	[文件列表]
ppc64 （非官方移植版）	4.44.1+dfsg-7.1+b2	602.4 kB	965.0 kB	[文件列表]
ppc64el	4.44.1+dfsg-7.1+b3	602.2 kB	901.0 kB	[文件列表]
riscv64	4.44.1+dfsg-7.1+b3	593.5 kB	757.0 kB	[文件列表]
s390x	4.44.1+dfsg-7.1+b3	593.2 kB	825.0 kB	[文件列表]
sh4 （非官方移植版）	4.44.1+dfsg-7.1+b2	607.6 kB	837.0 kB	[文件列表]
sparc64 （非官方移植版）	4.44.1+dfsg-7.1+b2	579.6 kB	1,555.0 kB	[文件列表]
x32 （非官方移植版）	4.44.1+dfsg-7.1+b2	597.5 kB	787.0 kB	[文件列表]