Pakket: dotter (4.44.1+dfsg-7.1 en anderen)

[ Bron: seqtools  ]

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Tags: Interface Toolkit: GTK

Andere aan dotter gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, ia64, loong64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2) [ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.16.2) [niet ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k, sh4]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libglib2.0-0t64 (>= 2.75.3) [ia64]

  GLib library of C routines

  dep: libglib2.0-0t64 (>= 2.76.0) [niet ia64]

• dep: libgtk2.0-0t64 (>= 2.12.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

dotter downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	4.44.1+dfsg-7.1+b2	591,7 kB	841,0 kB	[overzicht]
amd64	4.44.1+dfsg-7.1+b3	597,2 kB	809,0 kB	[overzicht]
arm64	4.44.1+dfsg-7.1+b3	584,7 kB	837,0 kB	[overzicht]
armel	4.44.1+dfsg-7.1+b3	576,7 kB	771,0 kB	[overzicht]
armhf	4.44.1+dfsg-7.1+b3	577,9 kB	707,0 kB	[overzicht]
hppa (unofficial port)	4.44.1+dfsg-7.1+b2	593,2 kB	792,0 kB	[overzicht]
i386	4.44.1+dfsg-7.1+b3	604,3 kB	835,0 kB	[overzicht]
ia64 (unofficial port)	4.44.1+dfsg-7.1	621,8 kB	1.052,0 kB	[overzicht]
loong64 (unofficial port)	4.44.1+dfsg-7.1+b2	591,8 kB	837,0 kB	[overzicht]
m68k (unofficial port)	4.44.1+dfsg-7.1+b2	592,0 kB	811,0 kB	[overzicht]
mips64el	4.44.1+dfsg-7.1+b3	600,6 kB	924,0 kB	[overzicht]
ppc64 (unofficial port)	4.44.1+dfsg-7.1+b2	602,4 kB	965,0 kB	[overzicht]
ppc64el	4.44.1+dfsg-7.1+b3	602,2 kB	901,0 kB	[overzicht]
riscv64	4.44.1+dfsg-7.1+b3	593,5 kB	757,0 kB	[overzicht]
s390x	4.44.1+dfsg-7.1+b3	593,2 kB	825,0 kB	[overzicht]
sh4 (unofficial port)	4.44.1+dfsg-7.1+b2	607,6 kB	837,0 kB	[overzicht]
sparc64 (unofficial port)	4.44.1+dfsg-7.1+b2	579,6 kB	1.555,0 kB	[overzicht]
x32 (unofficial port)	4.44.1+dfsg-7.1+b2	597,5 kB	787,0 kB	[overzicht]