Paket: dotter (4.44.1+dfsg-7.1 och andra)

[ Källkod: seqtools  ]

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Märken: Interface Toolkit: GTK

Andra paket besläktade med dotter

• dep: libc6 (>= 2.38) [ej alpha, ia64, loong64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2) [ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.16.2) [ej ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, hppa, ia64, m68k, sh4]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC stödbibliotek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC stödbibliotek

• dep: libglib2.0-0t64 (>= 2.75.3) [ia64]

  GLib library of C routines

  dep: libglib2.0-0t64 (>= 2.76.0) [ej ia64]

• dep: libgtk2.0-0t64 (>= 2.12.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Hämta dotter

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	591,7 kbyte	841,0 kbyte	[filförteckning]
amd64	4.44.1+dfsg-7.1+b3	597,2 kbyte	809,0 kbyte	[filförteckning]
arm64	4.44.1+dfsg-7.1+b3	584,7 kbyte	837,0 kbyte	[filförteckning]
armel	4.44.1+dfsg-7.1+b3	576,7 kbyte	771,0 kbyte	[filförteckning]
armhf	4.44.1+dfsg-7.1+b3	577,9 kbyte	707,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	593,2 kbyte	792,0 kbyte	[filförteckning]
i386	4.44.1+dfsg-7.1+b3	604,3 kbyte	835,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	4.44.1+dfsg-7.1	621,8 kbyte	1.052,0 kbyte	[filförteckning]
loong64 (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	591,8 kbyte	837,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	592,0 kbyte	811,0 kbyte	[filförteckning]
mips64el	4.44.1+dfsg-7.1+b3	600,6 kbyte	924,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	602,4 kbyte	965,0 kbyte	[filförteckning]
ppc64el	4.44.1+dfsg-7.1+b3	602,2 kbyte	901,0 kbyte	[filförteckning]
riscv64	4.44.1+dfsg-7.1+b3	593,5 kbyte	757,0 kbyte	[filförteckning]
s390x	4.44.1+dfsg-7.1+b3	593,2 kbyte	825,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	607,6 kbyte	837,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	579,6 kbyte	1.555,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	4.44.1+dfsg-7.1+b2	597,5 kbyte	787,0 kbyte	[filförteckning]