软件包：stacks（2.55+dfsg-1）

[ 源代码： stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

其他与 stacks 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, ppc64el]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP（GOMP）支持库

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU 标准 C++ 库，第3版

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  压缩库 - 运行时

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  同时作为一个虚包由这些包填实： r-cran-littler

• rec: python3

  交互式高级面向对象语言（默认 python3 版本）

下载 stacks

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	1,041.1 kB	5,465.0 kB	[文件列表]
arm64	910.1 kB	4,849.0 kB	[文件列表]
armel	875.0 kB	4,664.0 kB	[文件列表]
armhf	900.6 kB	3,312.0 kB	[文件列表]
i386	1,112.2 kB	5,680.0 kB	[文件列表]
mips64el	990.5 kB	6,867.0 kB	[文件列表]
mipsel	1,014.9 kB	6,522.0 kB	[文件列表]
ppc64el	1,033.4 kB	6,741.0 kB	[文件列表]
s390x	912.5 kB	5,601.0 kB	[文件列表]