Paket: lumpy-sv (0.3.1+dfsg-1) [debports]

[ Kaynak:  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

lumpy-sv ile İlgili Diğer Paketler

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.4.0

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• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libcurl4 (>= 7.16.2)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libssl1.1 (>= 1.1.0)

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• dep: libstdc++6 (>= 9)

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: sambamba

  tools for working with SAM/BAM data

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Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
sparc64 (resmi olmayan port)	151,6 kB	584,0 kB	[dosya listesi]