软件包:lumpy-sv(0.3.1+dfsg-1) [debports]
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
其他与 lumpy-sv 有关的软件包
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- dep: bamkit
- tools for common BAM file manipulations
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- dep: libbamtools2.4.0
- 软件包暂时不可用
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libcurl4 (>= 7.16.2)
- 简单易用的客户端 URL 传输软件库(OpenSSL 变种)
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- dep: libgcc-s1 (>= 3.4)
- GCC 支持库
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libssl1.1 (>= 1.1.0)
- 软件包暂时不可用
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库,第3版
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- 用于 Python 语言的快速数组运算库(Python 3)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samblaster
- marks duplicates, extracts discordant/split reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: sambamba
- tools for working with SAM/BAM data