Paket: r-bioc-dada2 (1.34.0+dfsg-1)

[ Kaynak: r-bioc-dada2  ]

Deneysel paket

Uyarı: Bu paket deneysel dağıtımdan geliyor. Bu, paketin kararsız veya hatalı olabileceği hatta veri kaybına sebep olabileceği anlamına gelmektedir. Lütfen kullanmadan önce değişim günlüğüne ve muhtemel diğer belgelendirmeye danıştığınızdan emin olun.

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

r-bioc-dada2 ile İlgili Diğer Paketler

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libtbb12 (>= 2021.4.0)

  parallelism library for C++ - runtime files

• dep: r-api-4.0

  Paket mevcut değil

• dep: r-api-bioc-3.20

  sanal paketi sağlayan r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.22.0)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.42.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-iranges (>= 2.6.0)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-shortread (>= 1.32.0)

  GNU R classes and methods for high-throughput short-read sequencing data

• dep: r-bioc-xvector (>= 0.16.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-ggplot2 (>= 2.1.0)

  implementation of the Grammar of Graphics

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppparallel (>= 4.3.0)

  parallel programming tools for Rcpp

• dep: r-cran-reshape2 (>= 1.4.1)

  Flexibly reshape data: a reboot of the reshape package

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

r-bioc-dada2 indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.745,5 kB	3.148,0 kB	[dosya listesi]