Paketti: bandage (0.8.1-1)

[ Source: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly and will be maintained by the Debian Med team.

Tagit: Interface Toolkit: Qt

Muut pakettiin bandage liittyvät paketit

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:4.0) [ei arm64]

  GCC:n apukirjasto

  dep: libgcc1 (>= 1:4.2) [arm64]

• dep: libgl1 [ei armhf]

  Vendor neutral GL dispatch library -- legacy GL support

• dep: libgles2 [armhf]

  Vendor neutral GL dispatch library -- GLESv2 support
  myös näennäispaketti, jonka toteuttaa mali-t62x-fbdev-driver, mali-t62x-wayland-driver, mali-t62x-x11-driver, mali-t76x-fbdev-driver, mali-t76x-wayland-driver, mali-t76x-x11-driver

• dep: libqt5core5a (>= 5.11.0~rc1) [amd64, i386]

  Qt 5 core module

  dep: libqt5core5a (>= 5.5.0) [arm64, armhf]

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.11.0~rc1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

Imuroi bandage

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	925.1 kt	2,236.0 kt	[tiedostoluettelo]
arm64	860.8 kt	2,134.0 kt	[tiedostoluettelo]
armhf	837.9 kt	1,564.0 kt	[tiedostoluettelo]
i386	972.7 kt	2,320.0 kt	[tiedostoluettelo]