Paket: ska (1.0+dfsg-2)

[ Kaynak: ska  ]

Split Kmer Analysis

SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.

ska ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64, mips64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

ska indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	130,9 kB	377,0 kB	[dosya listesi]
arm64	112,3 kB	337,0 kB	[dosya listesi]
armel	111,1 kB	336,0 kB	[dosya listesi]
armhf	116,6 kB	272,0 kB	[dosya listesi]
i386	137,1 kB	412,0 kB	[dosya listesi]
mips64el	114,8 kB	449,0 kB	[dosya listesi]
mipsel	117,6 kB	443,0 kB	[dosya listesi]
ppc64el	129,4 kB	465,0 kB	[dosya listesi]
s390x	117,7 kB	385,0 kB	[dosya listesi]