Pacote: ska (1.0+dfsg-2)

[ Fonte: ska  ]

Split Kmer Analysis

SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.

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Download de ska

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	130.9 kB	377.0 kB	[lista de arquivos]
arm64	112.3 kB	337.0 kB	[lista de arquivos]
armel	111.1 kB	336.0 kB	[lista de arquivos]
armhf	116.6 kB	272.0 kB	[lista de arquivos]
i386	137.1 kB	412.0 kB	[lista de arquivos]
mips64el	114.8 kB	449.0 kB	[lista de arquivos]
mipsel	117.6 kB	443.0 kB	[lista de arquivos]
ppc64el	129.4 kB	465.0 kB	[lista de arquivos]
s390x	117.7 kB	385.0 kB	[lista de arquivos]