Paket: spaln (3.0.2+dfsg-2 och andra)

[ Källkod: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andra paket besläktade med spaln

• dep: libc6 (>= 2.38) [riscv64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.39) [ej riscv64]

• dep: libgcc-s1 (>= 3.0) [riscv64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.3.1) [ej riscv64]

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 5)

  GNU standardbibliotek v3 för C++

• dep: spaln-data

  splicing-aware transcript-alignment to genomic DNA (data)

• dep: zlib1g (>= 1:1.2.0.2)

  Kompressionsbibliotek - körtidspaket

Hämta spaln

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	3.0.2+dfsg-2+b1	567,9 kbyte	1.945,0 kbyte	[filförteckning]
arm64	3.0.2+dfsg-2+b1	510,3 kbyte	2.231,0 kbyte	[filförteckning]
mips64el	3.0.2+dfsg-2+b1	541,2 kbyte	2.360,0 kbyte	[filförteckning]
ppc64el	3.0.2+dfsg-2+b1	573,3 kbyte	2.616,0 kbyte	[filförteckning]
riscv64	3.0.2+dfsg-2+b1	656,4 kbyte	3.350,0 kbyte	[filförteckning]
s390x	3.0.2+dfsg-2+b1	582,8 kbyte	2.061,0 kbyte	[filförteckning]