Paket: minimap2 (2.27+dfsg-1 och andra)

[ Källkod: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Andra paket besläktade med minimap2

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: zlib1g (>= 1:1.1.4) [ej armel, armhf]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

Hämta minimap2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.27+dfsg-1+b1	379,7 kbyte	508,0 kbyte	[filförteckning]
arm64	2.27+dfsg-1+b2	371,9 kbyte	512,0 kbyte	[filförteckning]
armel	2.27+dfsg-1+b1	389,0 kbyte	551,0 kbyte	[filförteckning]
armhf	2.27+dfsg-1+b1	390,1 kbyte	483,0 kbyte	[filförteckning]
i386	2.27+dfsg-1+b1	386,5 kbyte	535,0 kbyte	[filförteckning]
mips64el	2.27+dfsg-1+b1	404,1 kbyte	584,0 kbyte	[filförteckning]
ppc64el	2.27+dfsg-1+b1	390,9 kbyte	576,0 kbyte	[filförteckning]
riscv64	2.27+dfsg-1+b1	410,7 kbyte	520,0 kbyte	[filförteckning]
s390x	2.27+dfsg-1+b1	410,9 kbyte	592,0 kbyte	[filförteckning]