パッケージ: minimap2 (2.27+dfsg-1 など)
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
その他の minimap2 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: zlib1g (>= 1:1.1.4) [armel, armhf 以外]
- 圧縮ライブラリ - ランタイム
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]
minimap2 のダウンロード
| アーキテクチャ | バージョン | パッケージサイズ | インストールサイズ | ファイル |
|---|---|---|---|---|
| amd64 | 2.27+dfsg-1+b3 | 381.5 kB | 516.0 kB | [ファイル一覧] |
| arm64 | 2.27+dfsg-1+b4 | 371.7 kB | 512.0 kB | [ファイル一覧] |
| armel | 2.27+dfsg-1+b3 | 389.0 kB | 575.0 kB | [ファイル一覧] |
| armhf | 2.27+dfsg-1+b3 | 389.5 kB | 511.0 kB | [ファイル一覧] |
| i386 | 2.27+dfsg-1+b3 | 388.0 kB | 539.0 kB | [ファイル一覧] |
| mips64el | 2.27+dfsg-1+b3 | 403.7 kB | 584.0 kB | [ファイル一覧] |
| ppc64el | 2.27+dfsg-1+b3 | 391.9 kB | 576.0 kB | [ファイル一覧] |
| riscv64 | 2.27+dfsg-1+b3 | 405.6 kB | 512.0 kB | [ファイル一覧] |
| s390x | 2.27+dfsg-1+b3 | 411.5 kB | 592.0 kB | [ファイル一覧] |