Paquet : minimap2 (2.27+dfsg-1 et autres)

[ Paquet source : minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Autres paquets associés à minimap2

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: zlib1g (>= 1:1.1.4) [non armel, armhf]

  Bibliothèque de compression - binaires

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

Télécharger minimap2

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	2.27+dfsg-1+b2	381,5 ko	516,0 ko	[liste des fichiers]
arm64	2.27+dfsg-1+b3	371,8 ko	512,0 ko	[liste des fichiers]
armel	2.27+dfsg-1+b2	388,9 ko	551,0 ko	[liste des fichiers]
armhf	2.27+dfsg-1+b2	389,4 ko	479,0 ko	[liste des fichiers]
i386	2.27+dfsg-1+b2	388,0 ko	539,0 ko	[liste des fichiers]
mips64el	2.27+dfsg-1+b2	402,7 ko	584,0 ko	[liste des fichiers]
ppc64el	2.27+dfsg-1+b2	392,0 ko	576,0 ko	[liste des fichiers]
riscv64	2.27+dfsg-1+b2	405,7 ko	512,0 ko	[liste des fichiers]
s390x	2.27+dfsg-1+b2	411,4 ko	592,0 ko	[liste des fichiers]