Paket: minimap2 (2.17+dfsg-12 och andra)

[ Källkod: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Andra paket besläktade med minimap2

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: zlib1g (>= 1:1.1.4) [ej arm64]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

Hämta minimap2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.17+dfsg-12+b3	354,9 kbyte	467,0 kbyte	[filförteckning]
arm64	2.17+dfsg-12+b3	346,9 kbyte	451,0 kbyte	[filförteckning]
armel	2.17+dfsg-12+b3	365,9 kbyte	506,0 kbyte	[filförteckning]
armhf	2.17+dfsg-12+b3	365,4 kbyte	450,0 kbyte	[filförteckning]
i386	2.17+dfsg-12+b3	386,1 kbyte	574,0 kbyte	[filförteckning]
mips64el	2.17+dfsg-12+b3	375,1 kbyte	526,0 kbyte	[filförteckning]
mipsel	2.17+dfsg-12+b3	388,0 kbyte	549,0 kbyte	[filförteckning]
ppc64el	2.17+dfsg-12+b3	365,8 kbyte	559,0 kbyte	[filförteckning]
s390x	2.17+dfsg-12+b3	367,9 kbyte	523,0 kbyte	[filförteckning]