Paket: r-bioc-oligo (1.68.2+ds-1 och andra)

[ Källkod: r-bioc-oligo  ]

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Andra paket besläktade med r-bioc-oligo

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  eller libblas.so.3

  virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.29) [ej alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  eller liblapack.so.3

  virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.18 [hppa, ia64, sh4, x32]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.19 [ej hppa, ia64, sh4, x32]

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-bioc-affxparser (>= 1.39.4) [hppa, ia64, sh4, x32]

  Affymetrix File Parsing SDK

  dep: r-bioc-affxparser (>= 1.76.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-affyio (>= 1.35.0) [hppa, ia64, sh4, x32]

  BioConductor tools for parsing Affymetrix data files

  dep: r-bioc-affyio (>= 1.74.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-biobase (>= 2.27.3) [hppa, ia64, sh4, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics (>= 0.13.11) [hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-biostrings (>= 2.35.12) [hppa, ia64, sh4, x32]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.72.1) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-oligoclasses (>= 1.29.6) [hppa, ia64, sh4, x32]

  Classes for high-throughput arrays supported by oligo and crlmm

  dep: r-bioc-oligoclasses (>= 1.66.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-preprocesscore (>= 1.29.0) [hppa, ia64, sh4, x32]

  BioConductor collection of pre-processing functions

  dep: r-bioc-preprocesscore (>= 1.66.0) [ej hppa, ia64, sh4, x32]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [ej hppa, ia64, sh4, x32]

• dep: r-cran-dbi (>= 0.3.1)

  GNU R package providing a generic database interface

• dep: r-cran-ff

  Memory-Efficient Fast-Access Storage of Large Data

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• sug: r-bioc-annotationdbi [hppa, ia64, sh4, x32]

  GNU R Annotation Database Interface for BioConductor

  sug: r-bioc-annotationdbi (>= 1.66.0) [ej hppa, ia64, sh4, x32]

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [ej hppa, ia64, sh4, x32]

• sug: r-bioc-biomart [hppa, ia64, sh4, x32]

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

  sug: r-bioc-biomart (>= 2.60.1) [ej hppa, ia64, sh4, x32]

• sug: r-bioc-genefilter [hppa, ia64, sh4, x32]

  methods for filtering genes from microarray experiments

  sug: r-bioc-genefilter (>= 1.86.0) [ej hppa, ia64, sh4, x32]

• sug: r-bioc-limma [hppa, ia64, sh4, x32]

  linear models for microarray data

  sug: r-bioc-limma (>= 3.60.3) [ej hppa, ia64, sh4, x32]

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• sug: r-cran-runit

  GNU R package providing unit testing framework

Hämta r-bioc-oligo

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.68.2+ds-1	897,9 kbyte	1.352,0 kbyte	[filförteckning]
amd64	1.68.2+ds-1	898,9 kbyte	1.344,0 kbyte	[filförteckning]
arm64	1.68.2+ds-1	897,7 kbyte	1.352,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.66.0+ds-1	907,4 kbyte	1.348,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.66.0+ds-1	910,9 kbyte	1.381,0 kbyte	[filförteckning]
mips64el	1.68.2+ds-1	897,3 kbyte	1.355,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.68.2+ds-1	901,4 kbyte	1.417,0 kbyte	[filförteckning]
ppc64el	1.68.2+ds-1	900,8 kbyte	1.352,0 kbyte	[filförteckning]
riscv64	1.68.2+ds-1	898,3 kbyte	1.328,0 kbyte	[filförteckning]
s390x	1.68.2+ds-1	899,6 kbyte	1.340,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.66.0+ds-1	907,4 kbyte	1.354,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.68.2+ds-1	895,0 kbyte	2.314,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.66.0+ds-1	907,2 kbyte	1.338,0 kbyte	[filförteckning]