Package: r-bioc-oligo (1.68.2+ds-1 and others)

[ Source: r-bioc-oligo  ]

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Other Packages Related to r-bioc-oligo

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18 [hppa, ia64, sh4, x32]

  Package not available

• dep: r-api-bioc-3.19 [not hppa, ia64, sh4, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-affxparser (>= 1.39.4) [hppa, ia64, sh4, x32]

  Affymetrix File Parsing SDK

  dep: r-bioc-affxparser (>= 1.76.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-affyio (>= 1.35.0) [hppa, ia64, sh4, x32]

  BioConductor tools for parsing Affymetrix data files

  dep: r-bioc-affyio (>= 1.74.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-biobase (>= 2.27.3) [hppa, ia64, sh4, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics (>= 0.13.11) [hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-biostrings (>= 2.35.12) [hppa, ia64, sh4, x32]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.72.1) [not hppa, ia64, sh4, x32]

• dep: r-bioc-oligoclasses (>= 1.29.6) [hppa, ia64, sh4, x32]

  Classes for high-throughput arrays supported by oligo and crlmm

  dep: r-bioc-oligoclasses (>= 1.66.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-preprocesscore (>= 1.29.0) [hppa, ia64, sh4, x32]

  BioConductor collection of pre-processing functions

  dep: r-bioc-preprocesscore (>= 1.66.0) [not hppa, ia64, sh4, x32]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [not hppa, ia64, sh4, x32]

• dep: r-cran-dbi (>= 0.3.1)

  GNU R package providing a generic database interface

• dep: r-cran-ff

  Memory-Efficient Fast-Access Storage of Large Data

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

• sug: r-bioc-annotationdbi [hppa, ia64, sh4, x32]

  GNU R Annotation Database Interface for BioConductor

  sug: r-bioc-annotationdbi (>= 1.66.0) [not hppa, ia64, sh4, x32]

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, sh4, x32]

• sug: r-bioc-biomart [hppa, ia64, sh4, x32]

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

  sug: r-bioc-biomart (>= 2.60.1) [not hppa, ia64, sh4, x32]

• sug: r-bioc-genefilter [hppa, ia64, sh4, x32]

  methods for filtering genes from microarray experiments

  sug: r-bioc-genefilter (>= 1.86.0) [not hppa, ia64, sh4, x32]

• sug: r-bioc-limma [hppa, ia64, sh4, x32]

  linear models for microarray data

  sug: r-bioc-limma (>= 3.60.3) [not hppa, ia64, sh4, x32]

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-oligo

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.68.2+ds-1	897.9 kB	1,352.0 kB	[list of files]
amd64	1.68.2+ds-1	898.9 kB	1,344.0 kB	[list of files]
arm64	1.68.2+ds-1	897.7 kB	1,352.0 kB	[list of files]
hppa (unofficial port)	1.66.0+ds-1	907.4 kB	1,348.0 kB	[list of files]
ia64 (unofficial port)	1.66.0+ds-1	910.9 kB	1,381.0 kB	[list of files]
mips64el	1.68.2+ds-1	897.3 kB	1,355.0 kB	[list of files]
ppc64 (unofficial port)	1.68.2+ds-1	901.4 kB	1,417.0 kB	[list of files]
ppc64el	1.68.2+ds-1	900.8 kB	1,352.0 kB	[list of files]
riscv64	1.68.2+ds-1	898.3 kB	1,328.0 kB	[list of files]
s390x	1.68.2+ds-1	899.6 kB	1,340.0 kB	[list of files]
sh4 (unofficial port)	1.66.0+ds-1	907.4 kB	1,354.0 kB	[list of files]
sparc64 (unofficial port)	1.68.2+ds-1	895.0 kB	2,314.0 kB	[list of files]
x32 (unofficial port)	1.66.0+ds-1	907.2 kB	1,338.0 kB	[list of files]