Paket: libfastahack-dev (1.0.0+dfsg-11 och andra)

[ Källkod: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Märken: Software Development: Bibliotek, Role: Development Library

Andra paket besläktade med libfastahack-dev

• dep: libfastahack0 (= 1.0.0+dfsg-11) [alpha, ia64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (= 1.0.0+dfsg-11+b1) [hppa, m68k, ppc64, sh4, sparc64, x32]

  dep: libfastahack0 (= 1.0.0+dfsg-11+b2) [ej alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32]

Hämta libfastahack-dev

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.0.0+dfsg-11	29,4 kbyte	170,0 kbyte	[filförteckning]
amd64	1.0.0+dfsg-11+b2	27,2 kbyte	117,0 kbyte	[filförteckning]
arm64	1.0.0+dfsg-11+b2	25,5 kbyte	114,0 kbyte	[filförteckning]
armel	1.0.0+dfsg-11+b2	26,6 kbyte	105,0 kbyte	[filförteckning]
armhf	1.0.0+dfsg-11+b2	26,5 kbyte	92,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.0.0+dfsg-11+b1	27,1 kbyte	96,0 kbyte	[filförteckning]
i386	1.0.0+dfsg-11+b2	28,8 kbyte	102,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.0.0+dfsg-11	33,3 kbyte	165,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.0.0+dfsg-11+b1	26,6 kbyte	101,0 kbyte	[filförteckning]
mips64el	1.0.0+dfsg-11+b2	28,7 kbyte	136,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.0.0+dfsg-11+b1	27,1 kbyte	121,0 kbyte	[filförteckning]
ppc64el	1.0.0+dfsg-11+b2	27,3 kbyte	119,0 kbyte	[filförteckning]
riscv64	1.0.0+dfsg-11+b2	78,2 kbyte	697,0 kbyte	[filförteckning]
s390x	1.0.0+dfsg-11+b2	26,9 kbyte	117,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.0.0+dfsg-11+b1	29,5 kbyte	94,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.0.0+dfsg-11+b1	23,1 kbyte	108,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.0.0+dfsg-11+b1	27,4 kbyte	99,0 kbyte	[filförteckning]