Pakket: libfastahack-dev (1.0.0+dfsg-11 en anderen)

[ Bron: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Softwareontwikkeling: Bibliotheken, Role: Development Library

Andere aan libfastahack-dev gerelateerde pakketten

• dep: libfastahack0 (= 1.0.0+dfsg-11) [ia64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (= 1.0.0+dfsg-11+b1) [alpha, hppa, m68k, ppc64, sh4, sparc64, x32]

  dep: libfastahack0 (= 1.0.0+dfsg-11+b2) [niet alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32]

libfastahack-dev downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.0+dfsg-11+b1	28,5 kB	164,0 kB	[overzicht]
amd64	1.0.0+dfsg-11+b2	27,2 kB	117,0 kB	[overzicht]
arm64	1.0.0+dfsg-11+b2	25,5 kB	114,0 kB	[overzicht]
armel	1.0.0+dfsg-11+b2	26,6 kB	105,0 kB	[overzicht]
armhf	1.0.0+dfsg-11+b2	26,5 kB	92,0 kB	[overzicht]
hppa (unofficial port)	1.0.0+dfsg-11+b1	27,1 kB	96,0 kB	[overzicht]
i386	1.0.0+dfsg-11+b2	28,8 kB	102,0 kB	[overzicht]
ia64 (unofficial port)	1.0.0+dfsg-11	33,3 kB	165,0 kB	[overzicht]
m68k (unofficial port)	1.0.0+dfsg-11+b1	26,6 kB	101,0 kB	[overzicht]
mips64el	1.0.0+dfsg-11+b2	28,7 kB	136,0 kB	[overzicht]
ppc64 (unofficial port)	1.0.0+dfsg-11+b1	27,1 kB	121,0 kB	[overzicht]
ppc64el	1.0.0+dfsg-11+b2	27,3 kB	119,0 kB	[overzicht]
riscv64	1.0.0+dfsg-11+b2	78,2 kB	697,0 kB	[overzicht]
s390x	1.0.0+dfsg-11+b2	26,9 kB	117,0 kB	[overzicht]
sh4 (unofficial port)	1.0.0+dfsg-11+b1	29,5 kB	94,0 kB	[overzicht]
sparc64 (unofficial port)	1.0.0+dfsg-11+b1	23,1 kB	108,0 kB	[overzicht]
x32 (unofficial port)	1.0.0+dfsg-11+b1	27,4 kB	99,0 kB	[overzicht]