Paket: megadepth (1.2.0-4 och andra) [debports]

[ Källkod:  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Andra paket besläktade med megadepth

• dep: libbigwig0t64 (>= 0.4.6)

  C library for handling bigWig files

• dep: libc6.1 (>= 2.37)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC stödbibliotek

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

Hämta megadepth

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ia64 (inofficiell anpassning)	1.2.0-4+b1	99,7 kbyte	467,0 kbyte	[filförteckning]