Paket: libvcflib-tools (1.0.2+dfsg-2)

[ Källkod: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andra paket besläktade med libvcflib-tools

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [ej amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 9) [ej armel, armhf]

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.2+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• sug: r-cran-pracma

  practical numerical math functions for GNU R

Hämta libvcflib-tools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	703,5 kbyte	4.707,0 kbyte	[filförteckning]
arm64	641,8 kbyte	4.099,0 kbyte	[filförteckning]
armel	604,0 kbyte	3.654,0 kbyte	[filförteckning]
armhf	624,0 kbyte	2.950,0 kbyte	[filförteckning]
i386	741,8 kbyte	4.758,0 kbyte	[filförteckning]
mips64el	633,4 kbyte	4.721,0 kbyte	[filförteckning]
mipsel	639,3 kbyte	4.453,0 kbyte	[filförteckning]
ppc64el	703,5 kbyte	7.435,0 kbyte	[filförteckning]
s390x	647,7 kbyte	4.471,0 kbyte	[filförteckning]