Paket: libvcflib-tools (1.0.2+dfsg-2)

[ Quellcode: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andere Pakete mit Bezug zu libvcflib-tools

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [nicht amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, ppc64el]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

  dep: libstdc++6 (>= 9) [nicht armel, armhf]

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.2+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: python3

  Interaktive objektorientierte Hochsprache (Python3-Standardversion)

• dep: r-base-core

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• sug: r-cran-pracma

  practical numerical math functions for GNU R

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