Paket: libvcflib-tools (1.0.9+dfsg1-3 och andra)

[ Källkod: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andra paket besläktade med libvcflib-tools

• dep: libbz2-1.0 [sparc64]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34) [ej alpha, ia64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.35) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [alpha, m68k, ppc64, riscv64, sh4, x32]

• dep: libgcc-s1 (>= 3.0) [x32]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, mips64el]

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC stödbibliotek

• dep: libgomp1 (>= 4.2.1) [ej ia64, m68k, ppc64, sh4, x32]

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10) [sparc64]

  C library for high-throughput sequencing data formats

• dep: liblzma5 (>= 5.1.1alpha+20110809) [sparc64]

  XZ-format compression library

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libssw0 (>= 1.1) [sparc64]

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11) [ia64, m68k, ppc64, sh4, sparc64, x32]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 13.1) [amd64, arm64, mips64el, ppc64el, riscv64]

  dep: libstdc++6 (>= 13.2.0-7) [alpha]

• dep: libtabixpp0 (>= 1.0.0) [ej amd64, arm64, mips64el, ppc64el, riscv64]

  C++ wrapper to tabix indexer

• dep: libtabixpp0t64 (>= 1.0.0) [amd64, arm64, mips64el, ppc64el, riscv64]

  C++ wrapper to tabix indexer

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libvcflib1 (>= 1.0.3+dfsg) [ia64, m68k, ppc64, sh4, sparc64, x32]

  C++ library for parsing and manipulating VCF files

• dep: libvcflib2 (>= 1.0.9+dfsg1) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

  C++ library for parsing and manipulating VCF files

• dep: libwfa2-0 (>= 2.3.3) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

  exact gap-affine algorithm (shared library)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: zlib1g (>= 1:1.1.4) [sparc64]

  Kompressionsbibliotek - körtidspaket

• sug: r-cran-pracma

  practical numerical math functions for GNU R

Hämta libvcflib-tools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.0.9+dfsg1-3	613,1 kbyte	6.870,0 kbyte	[filförteckning]
amd64	1.0.9+dfsg1-3+b1	635,3 kbyte	3.830,0 kbyte	[filförteckning]
arm64	1.0.9+dfsg1-3+b1	564,4 kbyte	6.594,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.0.3+dfsg-2	853,2 kbyte	8.189,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.0.3+dfsg-2	711,2 kbyte	4.531,0 kbyte	[filförteckning]
mips64el	1.0.9+dfsg1-3+b1	591,2 kbyte	6.858,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.0.3+dfsg-2	707,1 kbyte	8.228,0 kbyte	[filförteckning]
ppc64el	1.0.9+dfsg1-3+b1	624,2 kbyte	6.786,0 kbyte	[filförteckning]
riscv64	1.0.9+dfsg1-3+b1	619,9 kbyte	2.974,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.0.3+dfsg-2	808,7 kbyte	6.691,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.0.3+dfsg-2	816,8 kbyte	91.827,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.0.3+dfsg-2	729,6 kbyte	4.483,0 kbyte	[filförteckning]