Paket: bwa (0.7.17-6 och andra)

[ Källkod: bwa  ]

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Märken: Biologi: Proteiner, Field: Biologi, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

Andra paket besläktade med bwa

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• rec: perl

  Larry Wall's Practical Extraction and Report Language

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Hämta bwa

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.7.17-6+b1	206,7 kbyte	452,0 kbyte	[filförteckning]
arm64	0.7.17-6+b1	193,2 kbyte	424,0 kbyte	[filförteckning]
armel	0.7.17-6+b1	192,4 kbyte	439,0 kbyte	[filförteckning]
armhf	0.7.17-6+b1	192,6 kbyte	327,0 kbyte	[filförteckning]
i386	0.7.17-6+b1	235,3 kbyte	531,0 kbyte	[filförteckning]
mips64el	0.7.17-6+b1	205,5 kbyte	511,0 kbyte	[filförteckning]
mipsel	0.7.17-6+b1	233,1 kbyte	549,0 kbyte	[filförteckning]
ppc64el	0.7.17-6+b1	224,3 kbyte	580,0 kbyte	[filförteckning]
s390x	0.7.17-6+b1	193,8 kbyte	476,0 kbyte	[filförteckning]